BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB007C02SP1|AL425656
(686 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 1302 0.0
>3x_Contig1717
Length = 18389
Score = 1302 bits (651), Expect = 0.0
Identities = 675/688 (98%), Gaps = 2/688 (0%)
Strand = Plus / Plus
Query: 1 taacttgagaattgtgttacagaaagtwagcgaag--agcgtcaccgttggaagcgcagt 58
|||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 6108 taacatgagaattgtgttacagaaagtaagcgaagctagcgtcaccgttggaagcgcagt 6167
Query: 59 tgtttcccaaattaaacatggatacatgctattagttgggattggtactgatgataagct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6168 tgtttcccaaattaaacatggatacatgctattagttgggattggtactgatgataagct 6227
Query: 119 agaagatattgacaaactgtcgaagaaaatactcacatttcggggatttgacgatgatgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6228 agaagatattgacaaactgtcgaagaaaatactcacatttcggggatttgacgatgatgc 6287
Query: 179 aggttatggatggaaaagaaacattagcgaagtggatggcgagatcttatgcgtgtccca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6288 aggttatggatggaaaagaaacattagcgaagtggatggcgagatcttatgcgtgtccca 6347
Query: 239 attcacacttatggcacgtacaagcmagggcactaaaccagatttccatttagcacagcg 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6348 attcacacttatggcacgtacaagcaagggcactaaaccagatttccatttagcacagcg 6407
Query: 299 tggggaattagccaatgaattgtatggacaatttatggacaagttgaaggcaggattggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6408 tggggaattagccaatgaattgtatggacaatttatggacaagttgaaggcaggattggg 6467
Query: 359 agacgataaggtacaaaacggtgtatttggagccatgatgagttgcmagttgacaaacga 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6468 agacgataaggtacaaaacggtgtatttggagccatgatgagttgcaagttgacaaacga 6527
Query: 419 gggtcccgtgactattatcttcgactctaaagcgtgagtcatttgttgcaaaamamagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 6528 gggtcccgtgactattatcttcgactctaaagcgtgagtcatttgttgcaaaaaaaagaa 6587
Query: 479 tctatatwtgccttgttagtcgttttgaatcttcagtctcaatcacagttagttgtggcg 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6588 tctatatatgccttgttagtcgttttgaatcttcagtctcaatcacagttagttgtggcg 6647
Query: 539 tcaattaamtcacgtgagacamagaaaagtttagtgcgtaactatgtaaagtttcacaaa 598
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 6648 tcaattaaatcacgtgagaaaaagaaaagtttagtgcgtaactatgtaaagtttcacaaa 6707
Query: 599 tctcttatttcagaggcagcatatataaggrgattagaaacaccaaagttttaaagggag 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6708 tctcttatttcagaggcagcatatataaggagattagaaacaccaaagttttaaagggag 6767
Query: 659 gatatcaactccaccttcctaactttcc 686
||||||||||||||||||||||||||||
Sbjct: 6768 gatatcaactccaccttcctaactttcc 6795
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.712 1.32
Gapped
Lambda K H
1.39 0.712 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3896
Number of Sequences: 1807
Number of extensions: 3896
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 686
length of database: 10,358,551
effective HSP length: 16
effective length of query: 670
effective length of database: 10,329,639
effective search space: 6920858130
effective search space used: 6920858130
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (30.0 bits)
S1: 12 (24.5 bits)
S2: 50 (100.5 bits)